Sequence analysis of theSpike, nsp12 (RNA-dependent RNA polymerase), nsp3 (PLpro),and nsp5 (3CLpro) genes reveals a distinct evolutionary pattern of SARS-CoV-2 variants circulating in Yogyakarta and Central Java provinces, Indonesia
Mohamad Saifudin Hakim1,*, Gunadi2, Ayu Rahayu1, Hendra Wibawa3, Laudria Stella Eryvinka2, Endah Supriyati4, Khanza Adzkia Vujira2, Kristy Iskandar5, Afiahayati6, Edwin Widyanto Daniwijaya1, Farida Nur Oktoviani1, Luthvia Annisa1, Fadila Dyah Trie Utami2, Verrell Christopher Amadeus2, Setiani Silvy Nurhidayah2, Tiara Putri Leksono2, Fiqih Vidiantoro Halim2, Eggi Arguni7, Titik Nuryastuti1, Tri Wibawa1
1 Department of Microbiology, Faculty of Medicine, Public Health and Nursing, Universitas Gadjah Mada, Yogyakarta, Indonesia
2 Pediatric Surgery Division, Department of Surgery and Genetics Working Group/Translational Research Unit, Faculty of Medicine, Public Health and Nursing, Universitas Gadjah Mada, Yogyakarta, Indonesia
3 Disease Investigation Center Wates-Yogyakarta, Directorate General of Livestok Services, Ministry of Agriculture, Indonesia
4 Centre for Tropical Medicine, Faculty of Medicine, Public Health and Nursing, Universitas Gadjah Mada, Yogyakarta, Indonesia
5 Department of Child Health and Genetics Working Group, Faculty of Medicine, Public Health and Nursing, Universitas Gadjah Mada/UGM Academic Hospital, Yogyakarta, Indonesia
6 Department of Computer Science and Electronics, Faculty of Mathematics and Natural Sciences, Universitas Gadjah Mada, Yogyakarta, Indonesia
7 Department of Child Health, Faculty of Medicine, Public Health and Nursing, Universitas Gadjah Mada/Dr. Sardjito Hospital, Yogyakarta, Indonesia