Data Availability Statement
The raw sequencing reads for T. polyphylla genome assembly have been deposited in the NCBI database with BioProject ID PRJNA870970 and the Nanopore, Illumina, and Hi-C raw data are available under accession nos. SRR21133002, SRR21133003, and SRR21132998, and RNA-seq data (roots, stems, leaves, and PacBio) are available under accession nos. SRR21132999, SRR21133001, SRR21133000, SRR21158993. The final assembly genome at contig level, chromosome level, and genome annotation information has been deposited in the National Genomics Data Center under accession no. PRJCA011134. The alignment files for the gene tree and species tree construction are available at https://doi.org/10.5061/dryad.fj6q573z3.