Supporting Information
Table S1 Chromosome lengths (bp) and number of protein-coding genes for each chromosome of the two Folsomia candida strains.
Table S2 Repetitive elements in the genome of the Folsomia candida DK strain.
Table S3 Repetitive elements in the genome of the Folsomia candida SH strain.
Table S4 Noncoding RNAs in the genome of the Folsomia candida DK strain.
Table S5 Noncoding RNAs in the genome of the Folsomia candida SH strain.
Table S6 Annotation statistics of protein-coding genes of the twoFolsomia strains.
Table S7 General statistics of orthology inference for eleven species.
Table S8 Gene family evolution inferred from CAFÉ.
Table S9 Significantly expanded gene families for two Folsomiastrains.
Figure S1. Hi-C interaction maps of the two Folsomia candidastrains.
Figure S2. WGD results obtained using BGMM mixture modelling inferred from the wgd pipeline. (a) FCDK; (b) FCSH. The first column plots Ks frequencies, the second transforms frequencies to log-normal distributions, the third column shows the probability of belonging to a particular component of the mixture shown in the second column, and the fourth column plots the mixture with associated weights for each component.
Figure S3. GO and KEGG enrichment for significantly expanded and species-specific gene families of FCDK (a‒d) and FCSH (e‒h).
Figure S4. Phylogeny and expansion of CCE, GST and UGT gene families. Ultrafast bootstrap values are shown at the nodes. Dk, FCDK; Sh, FCSH; Dm, Drosophila melanogaster . (a) CCE; (b) GST; (c) UGT.