Content Folsomia candida DK Folsomia candida SH
Sequencing
Illumina (Gb) 59.47 (270X) 13.74 (90X)
PacBio (Gb) 12.87 (58X) 11.79 (76X)
Hi-C (Gb) 48.85 (222X) 36.72 (238X)
Genome assembly
Assembly size (Mb) 219.08 153.90
Number of pseudo-chromosomes (sizes) 7 (216.64 Mb) 7 (150.53 Mb)
Number of scaffolds/contigs 75/321 250/850
Longest scaffold/contig (Mb) 44.87/13.22 32.28/8.88
N50 scaffold/contig length (Mb) 38.47/2.51 25.75/0.79
GC content (%) 37.49 38.54
BUSCO completeness (%) 97.3 97.0
Mapping ratio of Illumina reads (%) 97.14 94.71
Mapping ratio of PacBio reads (%) 95.52 97.02
Protein-coding genes
Number 25,139 21,609
Mean gene length (bp) 3,973.0 3,835.2
Exons/CDS/introns per gene 7.7/7.4/6.4 8.1/7.8/6.8
Mean exon/CDS/introns length 253.9/197.7/312.1 248.6/198.3/263.5
BUSCO completeness (%) 97.0 97.6
Repetitive elements
Size (Mb) 49.53 (22.61%) 15.43 (10.03%)
DNA transposons (Mb) 9.38 (4.28%) 2.56 (1.67%)
SINEs (kb) 15.59 (0.01%) 30.74 (0.02%)
LINEs (Mb) 3.21 (1.47%) 0.60 (0.39%)
LTRs (Mb) 4.82 (2.20%) 2.19 (1.43%)
Unclassified transposons (Mb) 29.31 (13.38%) 7.40 (4.81%)
Number of ncRNA* 396 334
rRNA 70 39
miRNA 34 28
snRNA 54 42
tRNA 115 104