Sequencing |
|
|
Illumina (Gb) |
59.47 (270X) |
13.74 (90X) |
PacBio (Gb) |
12.87 (58X) |
11.79 (76X) |
Hi-C (Gb) |
48.85 (222X) |
36.72 (238X) |
Genome assembly |
|
|
Assembly size (Mb) |
219.08 |
153.90 |
Number of pseudo-chromosomes (sizes) |
7 (216.64 Mb) |
7 (150.53
Mb) |
Number of scaffolds/contigs |
75/321 |
250/850 |
Longest scaffold/contig (Mb) |
44.87/13.22 |
32.28/8.88 |
N50 scaffold/contig length (Mb) |
38.47/2.51 |
25.75/0.79 |
GC content (%) |
37.49 |
38.54 |
BUSCO completeness (%) |
97.3 |
97.0 |
Mapping ratio of Illumina reads (%) |
97.14 |
94.71 |
Mapping ratio of PacBio reads (%) |
95.52 |
97.02 |
Protein-coding genes |
|
|
Number |
25,139 |
21,609 |
Mean gene length (bp) |
3,973.0 |
3,835.2 |
Exons/CDS/introns per gene |
7.7/7.4/6.4 |
8.1/7.8/6.8 |
Mean exon/CDS/introns length |
253.9/197.7/312.1 |
248.6/198.3/263.5 |
BUSCO completeness (%) |
97.0 |
97.6 |
Repetitive elements |
|
|
Size (Mb) |
49.53 (22.61%) |
15.43 (10.03%) |
DNA transposons (Mb) |
9.38 (4.28%) |
2.56 (1.67%) |
SINEs (kb) |
15.59 (0.01%) |
30.74 (0.02%) |
LINEs (Mb) |
3.21 (1.47%) |
0.60 (0.39%) |
LTRs (Mb) |
4.82 (2.20%) |
2.19 (1.43%) |
Unclassified transposons (Mb) |
29.31 (13.38%) |
7.40
(4.81%) |
Number of ncRNA* |
396 |
334 |
rRNA |
70 |
39 |
miRNA |
34 |
28 |
snRNA |
54 |
42 |
tRNA |
115 |
104 |