SARS-CoV-2
(E_Sarbeco)
|
FP
RP
P
|
ACA GGT ACG TTA ATA GTT AAT AGC GT
ATA TTG CAG CAG TAC GCA CAC A
FAM-ACA TAG CCA TCC TTA CTG CGC TTC G-BHQ1
|
10
10
10
|
SARS-CoV-2
(RdRP_SARS)
|
F
R
S
|
GTG ARA TGG TCA TGT GTG GCG G
CAR ATG TTA AAS ACA CTA TTA GCA TA
CAG GT(G) (G)AA CC[BHQ1-Dt] CAT CA(G) (G)AG ATG C
|
10
10
10
|
HCoV-229E
|
FP
RP
P
|
CAG TCA AAT GGG CTG ATG CA
AAA GGG CTA TAA AGA GAA TAA GGT ATT CT
FAM CCC TGA CGA CCA CGT TGT GGT TCA BHQ-1
|
35.5
25
2.5
|
HCoV-OC43
|
FP
RP
P
|
CGA TGA GGC TAT TCC GAC TAG GT
CCT TCC TGA GCC TTC AAT ATA GTA ACC
FAM TCC GCC TGG CAC GGT ACT CCC T BHQ-1
|
25
37.5
2.5
|
HCoV-NL63
|
FP
RP
P
|
GAC CAA AGC ACT GAA TAA CAT TTT CC
ACC TAA TAA GCC TCT TTC TCA ACC C
FAM AAC ACG CTT (BHQ-1) CCA ACG AGG TTT CTT CAA CTG AG
|
12.5
12.5
2.5
|
HCoV-HKU1
|
FP
RP
P
|
CCT TGC GAA TGA ATG TGC T
TTG CAT CAC CAC TGC TAG TAC CAC
FAM TGT GTG GCG GTT GCT ATT ATG TTA AGC CTG BHQ-1
|
5
37.5
2.5
|
HRSV
|
FP
RP
P
|
GGC AAA TAT GGA AAC ATA CGT GAA
TCT TTT TCT AGG ACA TTG TAY TGA ACA G
FAM CTG TGT ATG TGG AGC CTT CGT GAA GCT BHQ-1
|
25
12.5
2.5
|
HMpV
|
FP
RP
P
|
CAA GTG TGA CAT TGC TGA YCT RAA
ACT GCC GCA CAA CAT TTA GRA A
FAM TGG CYG TYA GCT TCA GTC AAT TCA ACA GA BHQ-1
|
30
30
5
|
HMdV
|
FP
PR
P
|
GCC CCA GTG GTC TTA CAT GCA CAT C
GCC ACG GTG GGG TTT CTA AAC TT
FAM TGC ACC AGA CCC GGG CTC AGG TAC TCC GA BHQ-1
|
25
25
5
|
EV
|
FP
RP
P
|
GGT GGC TGC GTT GGC
GAA ACA CGG ACA CCC AAA GTA
FAM TCC TCC GGC CCC TGA ATG YGG C BHQ-1
|
50
50
5
|
PBpV
|
FP
RP
P
|
TGC AGA CAA CGC YTA GTT GTT T
CTG TCC CGC CCA AGA TAC A
FAM CCA GGA TTG GGT GGA ACC TGC AAA BHQ-1
|
25
25
5
|
RV
|
FP1
FP2
RP
P
|
CYA GCC TGC GTG GC
CYA GCC TGC GTG GT
GAA ACA CGG ACA CCC AAA GTA
FAM TCC TCC GGC CCC TGA ATG YGG C BHQ-1
|
50
50
50
5
|
HPIV1
|
FP
RP
P
|
ACA AGT TGT CAA YGT CTT AAT TCR TAT
TCG GCA CCT AAG TAR TTY TGA GTT
FAM ATA GGC CAA AGA T (BHQ-1) TG TTG TCG AGA CTA TTC CAA
|
25
25
2.5
|
HPIV2
|
FP
RP
P
|
GCA TTT CCA ATC TAC AGG ACT ATG A
ACC TCC TGG TAT AGC AGT GAC TGA A
FAM CCA TTT ACC T (BHQ-1) AA GTG ATG GAA TCA ATC GCA AA
|
37.5
37.5
2.5
|
HPIV3
|
FP
RP
P
|
TGG YTC AAT CTC AAC AAC AAG ATT TAA G
TAC CCG AGA AAT ATT ATT TTG CC
FAM CCC RTC TGT (BHQ-1) TGG ACC AGG GAT ATA CTA CAA A
|
37.5
25
10
|
HPIV4
|
FP
RP
P
|
CTG CCA AAT CGG CAA TTA AAC
CTG GAC GCA ATC ATA AGR TGA TTC
FAM CAT TAT TAT CTC TGC T (BHQ-1) TT CCT TAC AGG CCA CAT CA
|
15
15
5
|
Inf A
|
FP
RP
P
|
GAC CRA TCC TGT CAC CTC TGA C
AGG GCA TTY TGG ACA AAK CGT CTA
FAM TGC AGT CCT CGC TCA CTG GGC ACG BHQ-1
|
40
40
10
|
Inf B
|
FP
RP
P
|
TCC TCA AYT CAC TCT TCG AGC G
CGG TGC TCT TGA CCA AAT TGG
FAM CCA ATT CGA GCA GCT GAA ACT GCG GTG BHQ-1
|
40
40
10
|
Inf A H3
|
FP
RP
S
|
AAG CAT TCC YAA TGA CAA ACC
ATT GCR CCR AAT ATG CCT CTA GT
FAM CAG GAT CAC AT (BHQ-1) A TGG GSC CTG TCC CAG
|
40
40
10
|
RNAse P
|
FP
RP
S
|
CCA AGT GTG AGG GCT GAA AAG
TGT TGT GGC TGA TGA ACT ATA AAA GG
FAM CCC CAG TCT CTG TCA GCA CTC CCT TC BHQ-1
|
15
15
5
|