References
Arandjelovic, M., Guschanski, K., Schubert, G., Harris, T. R., Thalmann,
O., Siedel, H., & Vigilant, L. (2009). Two-step multiplex polymerase
chain reaction improves the speed and accuracy of genotyping using DNA
from noninvasive and museum samples. Mol Ecol Resour, 9 (1),
28-36. doi:10.1111/j.1755-0998.2008.02387.x
Arandjelovic, M., Head, J., Boesch, C., Robbins, M. M., & Vigilant, L.
(2014). Genetic inference of group dynamics and female kin structure in
a western lowland gorilla population (Gorilla gorilla gorilla).Primate Biology, 1 (1), 29-38. doi:10.5194/pb-1-29-2014
Arandjelovic, M., & Vigilant, L. (2018). Non-invasive genetic censusing
and monitoring of primate populations. Am J Primatol, 80 (3),
e22743. doi:10.1002/ajp.22743
Barbara, T., Palma-Silva, C., Paggi, G. M., Bered, F., Fay, M. F., &
Lexer, C. (2007). Cross-species transfer of nuclear microsatellite
markers: potential and limitations. Mol Ecol, 16 (18), 3759-3767.
doi:10.1111/j.1365-294X.2007.03439.x
Barbian, H. J., Connell, A. J., Avitto, A. N., Russell, R. M., Smith, A.
G., Gundlapally, M. S., . . . Hahn, B. H. (2018). CHIIMP: An automated
high-throughput microsatellite genotyping platform reveals greater
allelic diversity in wild chimpanzees. Ecology and Evolution,
8 (16), 7946-7963. doi:10.1002/ece3.4302
Bradley, B. J., Boesch, C., & Vigilant, L. (2000). Identification and
redesign of human microsatellite markers for genotyping wild chimpanzee
(Pan troglodytes verus) and gorilla (Gorilla gorilla gorilla) DNA from
faeces. Conservation Genetics , 289–292.
Buchan, J. C., Archie, E. A., Van Horn, R. C., Moss, C. J., & Alberts,
S. C. (2005). Locus effects and sources of error in noninvasive
genotyping. Molecular Ecology Notes, 5 (3), 680-683.
doi:10.1111/j.1471-8286.2005.01002.x
Carroll, E. L., Bruford, M. W., DeWoody, J. A., Leroy, G., Strand, A.,
Waits, L., & Wang, J. (2018). Genetic and genomic monitoring with
minimally invasive sampling methods. Evol Appl, 11 (7), 1094-1119.
doi:10.1111/eva.12600
Charpentier, M. J., Fontaine, M. C., Cherel, E., Renoult, J. P.,
Jenkins, T., Benoit, L., . . . Tung, J. (2012). Genetic structure in a
dynamic baboon hybrid zone corroborates behavioural observations in a
hybrid population. Mol Ecol, 21 (3), 715-731.
doi:10.1111/j.1365-294X.2011.05302.x
Coote, T., & Bruford, M. W. (1996). Human Microsatellites Applicable
for Analysis of Genetic Variation in Apes and Old World Monkeys.The Journal of Heredity .
Cunningham, E. P., Dooley, J. J., Splan, R. K., & Bradley, D. G.
(2001). Microsatellite diversity, pedigree relatedness and the
contributions of founder lineages to thoroughbred horses. Animal
Genetics, 32 , 360-364.
Dal Pesco, F. (2019). Dynamics and fitness benefits of male-male
sociality in wild Guinea baboons (Papio papio). Georg-August-University
Göttingen. Retrieved from
http://hdl.handle.net/21.11130/00-1735-0000-0005-134F-E
De Barba, M., Miquel, C., Lobreaux, S., Quenette, P. Y., Swenson, J. E.,
& Taberlet, P. (2017). High-throughput microsatellite genotyping in
ecology: improved accuracy, efficiency, standardization and success with
low-quantity and degraded DNA. Mol Ecol Resour, 17 (3), 492-507.
doi:10.1111/1755-0998.12594
De Moor, D., Roos, C., Ostner, J., & Schulke, O. (2020). Bonds of bros
and brothers: kinship and social bonding in post-dispersal male
macaques. Mol Ecol . doi:10.1111/mec.15560
Edgar, R. C. (2004). MUSCLE: multiple sequence alignment with high
accuracy and high throughput. Nucleic Acids Res, 32 (5),
1792-1797. doi:10.1093/nar/gkh340
Ellegren, H. (2000). Heterogeneous mutation processes in human
microsatellite DNA sequences. Nature genetics, 24 (4), 400-402.
Ely, J. J., Gonzalez, D. L., Reeves-Daniel, A., & Stone, W. H. (1998).
Individual Identification and Paternity Determination in Chimpanzees
(Pan troglodytes) Using Human Short Tandem Repeat (STR) Markers.International Journal of Primatology, 19 , 225-271.
Engelhardt, A., Muniz, L., Perwitasari-Farajallah, D., & Widdig, A.
(2017). Highly Polymorphic Microsatellite Markers for the Assessment of
Male Reproductive Skew and Genetic Variation in Critically Endangered
Crested Macaques (Macaca nigra). Int J Primatol, 38 (4), 672-691.
doi:10.1007/s10764-017-9973-x
Ferreira da Silva, M. J., Kopp, G. H., Casanova, C., Godinho, R.,
Minhós, T., Sá, R., . . . Bruford, M. W. (2018). Disrupted dispersal and
its genetic consequences: Comparing protected and threatened baboon
populations (Papio papio) in West Africa. PLOSONE .
doi:https://doi.org/10.1371/ journal.pone.0194189
Goodwin, W., Linacre, A., & Hadi, S. (2011). An introduction to
forensic genetics (Vol. 2): John Wiley & Sons.
Gouy, M., Guindon, S., & Gascuel, O. (2010). SeaView version 4: A
multiplatform graphical user interface for sequence alignment and
phylogenetic tree building. Mol Biol Evol, 27 (2), 221-224.
doi:10.1093/molbev/msp259
Guichoux, E., Lagache, L., Wagner, S., Chaumeil, P., Leger, P., Lepais,
O., . . . Petit, R. J. (2011). Current trends in microsatellite
genotyping. Mol Ecol Resour, 11 (4), 591-611.
doi:10.1111/j.1755-0998.2011.03014.x
Gulcher, J. (2012). Microsatellite markers for linkage and association
studies. Cold Spring Harb Protoc, 4 (1559-6095 (Electronic)),
425-432. doi:10.1101/pdb.top068510
Hamada, H., Petrino, M. G., & Kakunaga, T. (1982). A novel repeated
element with Z-DNA-forming potential is widely found in evolutionarily
diverse eukaryotic genomes. Proceedings of the National Academy of
Sciences, 79 (21), 6465-6469.
Inoue, E., Ogata, M., Seino, S., & Matsuda, I. (2016). Sex
Identification and Efficient Microsatellite Genotyping Using Fecal DNA
in Proboscis Monkeys (<i>Nasalis
larvatus</i>). Mammal Study, 41 (3),
141-148, 148.
Johannesen, J., Fabritzek, A. G., Ebner, B., & Bikar, S. E. (2017).
Characterisation of microsatellite and SNP markers from Miseq and
genotyping-by-sequencing data among parapatric Urophora cardui
(Tephritidae) populations. PeerJ, 5 , e3582.
doi:10.7717/peerj.3582
Kayser, M., Ritter, H., Bercovitch, F., Mrug, M., Roewer, L., &
Nürnberg, P. (1996). Identification of highly polymorphic
microsatellites in the rhesus macaque Macaca mulatta by cross-species
amplification. Molecular Ecology, 5 (1), 157-159.
doi:10.1111/j.1365-294X.1996.tb00302.x
Kheng, V., Zichello, J. M., Lumbantobing, D. N., Lawalata, S. Z. S.,
Andayani, N., & Melnick, D. J. (2017). Phylogeography, Population
Structure, and Conservation of the Javan Gibbon (Hylobates moloch).International Journal of Primatology, 39 (1), 5-26.
doi:10.1007/s10764-017-0005-7
Kopp, G. H., Fischer, J., Patzelt, A., Roos, C., & Zinner, D. (2015).
Population genetic insights into the social organization of Guinea
baboons (Papio papio): Evidence for female-biased dispersal. Am J
Primatol, 77 (8), 878-889. doi:10.1002/ajp.22415
McCarthy, M. S., Lester, J. D., Cibot, M., Vigilant, L., & McLennan, M.
R. (2020). Atypically High Reproductive Skew in a Small Wild Chimpanzee
Community in a Human-Dominated Landscape. Folia Primatol (Basel) ,
1-9. doi:10.1159/000508609
Minkner, M. M. I., Young, C., Amici, F., McFarland, R., Barrett, L.,
Grobler, J. P., . . . Widdig, A. (2018). Assessment of Male Reproductive
Skew via Highly Polymorphic STR Markers in Wild Vervet Monkeys,
Chlorocebus pygerythrus. J Hered, 109 (7), 780-790.
doi:10.1093/jhered/esy048
Mittermeier, R. A., Wilson, D. E., & Rylands, A. B. (2013).Handbook of the Mammals of the World: Primates (Vol. 3).
Barcelona: Lynx Edicions.
Monteiro, L., Bonnemaison, D., Vekris, A., Petry, K. G., Bonnet, J.,
Vidal, R., . . . Mégraud, F. (1997). Complex Polysaccharides as PCR
Inhibitors in Feces: Helicobacter pylori Model. American Society
for Microbiology, 35 (4), 995–998.
Morin, P. A., Mahboubi, P., Wedel, S., & Rogers, J. (1998). Rapid
Screening and Comparison of Human Microsatellite Markers in Baboons:
Allele Size Is Conserved, but Allele Number Is Not. Genomics, 53 ,
12–20.
Navidi, W., Arnheim, N., & Waterman, M. S. (1992). A Multiple-Tubes
Approach for Accurate Genotyping of Very Small DNA Samples by Using PCR:
Statistical Considerations. Am. J. Hum. Genet., 50 , 347-359.
Newman, T. K., Fairbanks, L. A., Pollack, D., & Rogers, J. (2002).
Effectiveness of human microsatellite loci for assessing paternity in a
captive colony of vervets (Chlorocebus aethiops sabaeus). Am J
Primatol, 56 (4), 237-243. doi:10.1002/ajp.1078
Norman, A. J., Putnam, A. S., & Ivy, J. A. (2019). Use of molecular
data in zoo and aquarium collection management: Benefits, challenges,
and best practices. Zoo Biol, 38 (1), 106-118.
doi:10.1002/zoo.21451
Pasqualotto, A. C., Denning, D. W., & Anderson, M. J. (2007). A
cautionary tale: Lack of consistency in allele sizes between two
laboratories for a published multilocus microsatellite typing system.J Clin Microbiol, 45 (2), 522-528. doi:10.1128/JCM.02136-06
Perry, G. H., Marioni, J. C., Melsted, P., & Gilad, Y. (2010).
Genomic-scale capture and sequencing of endogenous DNA from feces.Mol Ecol, 19 (24), 5332-5344. doi:10.1111/j.1365-294X.2010.04888.x
Pimentel, J. S. M., Carmo, A. O., Rosse, I. C., Martins, A. P. V.,
Ludwig, S., Facchin, S., . . . Kalapothakis, E. (2018). High-Throughput
Sequencing Strategy for Microsatellite Genotyping Using Neotropical Fish
as a Model. Front Genet, 9 , 73. doi:10.3389/fgene.2018.00073
Pompanon, F., Bonin, A., Bellemain, E., & Taberlet, P. (2005).
Genotyping errors: causes, consequences and solutions. Nat Rev
Genet, 6 (11), 847-859. doi:10.1038/nrg1707
Roeder, A. D., Bonhomme, M., Heijmans, C., Bruford, M. W., Crouau-Roy,
B., Doxiadis, G., & Otting, N. (2009). A large panel of microsatellite
markers for genetic studies in the infra-order catarrhini. Folia
Primatol (Basel), 80 (2), 63-69. doi:10.1159/000211121
Sarhanova, P., Pfanzelt, S., Brandt, R., Himmelbach, A., & Blattner, F.
R. (2018). SSR-seq: Genotyping of microsatellites using next-generation
sequencing reveals higher level of polymorphism as compared to
traditional fragment size scoring. Ecol Evol, 8 (22), 10817-10833.
doi:10.1002/ece3.4533
Sefc, K. M., Payne, R. B., & Sorenson, M. D. (2003). Microsatellite
Amplification from Museum Feather Samples: Effects of Fragment Size and
Template Concentration on Genotyping Errors. The Auk, 120 (4),
982. doi:10.1642/0004-8038(2003)120[0982:mafmfs]2.0.co;2
Smith, K. L., Alberts, S. C., Bayes, M. K., Bruford, M. W., Altmann, J.,
& Ober, C. (2000). Cross-Species Amplification, Non-Invasive
Genotyping, and Non-Mendelian Inheritance of Human STRPs in Savannah
Baboons. American Journal of Primatology, 51 , 219–227.
Städele, V., Roberts, E. R., Barrett, B. J., Strum, S. C., Vigilant, L.,
& Silk, J. B. (2019). Male-female relationships in olive baboons (Papio
anubis): Parenting or mating effort? J Hum Evol, 127 , 81-92.
doi:10.1016/j.jhevol.2018.09.003
Taberlet, P., Griffin, S., Goossens, B., Questiau, S., Manceau, V.,
Escaravage, N., . . . Bouvet, J. (1996). Reliable genotyping of samples
with very low DNA quantities using PCR. Nucleic Acids Research,
24 (16), 3189–3194.
Tautz, D., & Renz, M. (1984). Simple sequences are ubiquitous
repetitive components of eukaryotic genomes. Nucleic Acids
Research, 12 (10).
Vartia, S., Villanueva-Canas, J. L., Finarelli, J., Farrell, E. D.,
Collins, P. C., Hughes, G. M., . . . Carlsson, J. (2016). A novel method
of microsatellite genotyping-by-sequencing using individual
combinatorial barcoding. R Soc Open Sci, 3 (1), 150565.
doi:10.1098/rsos.150565
Waits, L. P., & Paetkau, D. (2005). Noninvasive Genetic Sampling Tools
for Wildlife Biologists: A Review of Applications and Recommendations
for Accurate Data Collection. Journal of Wildlife Management,
69 (4), 1419-1433.
doi:10.2193/0022-541x(2005)69[1419:ngstfw]2.0.co;2
Wasser, S. K., Shedlock, A. M., Comstock, K., Ostrander, E. A.,
Mutayoba, B., & Stephens, M. (2004). Assigning African elephant DNA to
geographic region of origin: applications to the ivory trade. Proc
Natl Acad Sci U S A, 101 (41), 14847-14852. doi:10.1073/pnas.0403170101